IDC-REST-MCP/.github/workflows/ci.yml at main · ImagingDataCommons/IDC-REST-MCP · GitHub

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name: CI

# Lint + test the API/MCP package (src/idc_api, tests). No GCP or credentials needed; the
# first test run downloads the specialized idc-index parquet (IDC_API_INCLUDE_INDICES=all
# by default).

on:
  workflow_dispatch:
  push:
    branches: [main]
    paths:
      - "src/idc_api/**"
      - "tests/**"
      - "pyproject.toml"
      - "uv.lock"
      - ".github/workflows/ci.yml"
  pull_request:
    paths:
      - "src/idc_api/**"
      - "tests/**"
      - "pyproject.toml"
      - "uv.lock"
      - ".github/workflows/ci.yml"

concurrency:
  group: ci-${{ github.ref }}
  cancel-in-progress: true

permissions:
  contents: read

jobs:
  test:
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        python-version: ["3.11", "3.12"]
    steps:
      - uses: actions/checkout@v7

      - name: Set up uv
        uses: astral-sh/setup-uv@v7
        with:
          enable-cache: true
          python-version: ${{ matrix.python-version }}

      - name: Install (locked deps + dev extras)
        run: uv sync --locked --extra dev --python ${{ matrix.python-version }}

      - name: Lint (ruff)
        run: uv run ruff check src tests

      - name: Format (ruff)
        run: uv run ruff format --check src tests

      - name: Security lint (bandit)
        run: uv run bandit -q -r src/idc_api

      - name: Dependency vulnerability scan (pip-audit)
        run: uv run pip-audit

      - name: Test (pytest)
        run: uv run pytest tests -q