Query Unit Tests - CodeQL Development MCP Server

[UPDATE PRIMITIVE] Fix bugs 1–5 and implement design improvements 1–3, 5 from v2.25.1-next.2 evaluation #112

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Run time

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Job	Run time
Query Unit Tests - actions	2m 36s
Query Unit Tests - java	3m 34s
Query Unit Tests - cpp	2m 26s
Query Unit Tests - go	2m 28s
Query Unit Tests - rust	7m 41s
Query Unit Tests - python	2m 44s
Query Unit Tests - javascript	3m 43s
Query Unit Tests - ruby	5m 30s
Query Unit Tests - csharp	3m 9s
	33m 51s