Upgrade CodeQL CLI dependency to v2.25.1 (#192)

Author: github-actions[bot]

.codeql-version

@@ -1 +1 @@
-v2.25.0
+v2.25.1

CHANGELOG.md

@@ -14,6 +14,36 @@ release cadence.
 
 _Changes on `main` since the latest tagged release that have not yet been included in a stable release._
 
+## [v2.25.1] — 2026-03-29
+
+### Highlights
+
+- **Upgraded CodeQL CLI to v2.25.1** — Full compatibility with the latest CodeQL CLI release, including upgraded QL pack dependencies for all supported languages. ([#192](https://github.com/advanced-security/codeql-development-mcp-server/pull/192))
+- **Added `CHANGELOG.md` with full release history** — Comprehensive changelog following [Keep a Changelog](https://keepachangelog.com/en/1.1.0/) format, with a maintenance agent skill and `markdownlint` CI enforcement. ([#193](https://github.com/advanced-security/codeql-development-mcp-server/pull/193))
+
+### Added
+
+#### Infrastructure & CI/CD
+
+- Added `CHANGELOG.md` covering all stable releases (v2.24.0 through v2.25.0) with Highlights, Added, Changed, Fixed, Dependencies, and other standard sections. ([#193](https://github.com/advanced-security/codeql-development-mcp-server/pull/193))
+- Added `maintain-changelog` agent skill (`.github/skills/maintain-changelog/SKILL.md`) with a 5-phase workflow for drafting, classifying, and promoting changelog entries. ([#193](https://github.com/advanced-security/codeql-development-mcp-server/pull/193))
+- Added `changelog_md.instructions.md` applied automatically when editing `CHANGELOG.md`. ([#193](https://github.com/advanced-security/codeql-development-mcp-server/pull/193))
+- Added `markdownlint-cli` with `.markdownlint.yml` config and `.markdownlintignore`, enforced via `npm run lint:md` and the `lint-and-format.yml` CI workflow. ([#193](https://github.com/advanced-security/codeql-development-mcp-server/pull/193))
+
+### Fixed
+
+- **`upgrade-packs.sh` not enforcing explicit upgrades** — Fixed the pack upgrade script to always regenerate lock files and display output on failure, preventing silent staleness during CodeQL CLI upgrades. ([#192](https://github.com/advanced-security/codeql-development-mcp-server/pull/192))
+
+### Dependencies
+
+- Upgraded CodeQL CLI dependency to v2.25.1. ([#192](https://github.com/advanced-security/codeql-development-mcp-server/pull/192))
+- Upgraded all `ql-mcp-*` pack dependencies and regenerated lock files for all supported languages. ([#192](https://github.com/advanced-security/codeql-development-mcp-server/pull/192))
+- Added `markdownlint-cli` as a root dev dependency. ([#193](https://github.com/advanced-security/codeql-development-mcp-server/pull/193))
+
+**Full Changelog**: [`v2.25.0...v2.25.1`](https://github.com/advanced-security/codeql-development-mcp-server/compare/v2.25.0...v2.25.1)
+
+---
+
 ## [v2.25.0] — 2026-03-27
 
 ### Highlights
@@ -278,7 +308,8 @@ _Initial public release of the CodeQL Development MCP Server._
 
 <!-- Link definitions -->
 
-[Unreleased]: https://github.com/advanced-security/codeql-development-mcp-server/compare/v2.25.0...HEAD
+[Unreleased]: https://github.com/advanced-security/codeql-development-mcp-server/compare/v2.25.1...HEAD
+[v2.25.1]: https://github.com/advanced-security/codeql-development-mcp-server/releases/tag/v2.25.1
 [v2.25.0]: https://github.com/advanced-security/codeql-development-mcp-server/releases/tag/v2.25.0
 [v2.24.3]: https://github.com/advanced-security/codeql-development-mcp-server/releases/tag/v2.24.3
 [v2.24.2]: https://github.com/advanced-security/codeql-development-mcp-server/releases/tag/v2.24.2

client/integration-tests/primitives/tools/codeql_bqrs_interpret/sarif_format/after/results.sarif

@@ -1 +1 @@
-{"$schema":"https://json.schemastore.org/sarif-2.1.0.json","version":"2.1.0","runs":[{"tool":{"driver":{"name":"CodeQL","organization":"GitHub","semanticVersion":"2.25.0","rules":[{"id":"test/query","name":"test/query","shortDescription":{"text":"ExampleQuery1"},"fullDescription":{"text":"Example query for integration testing of the codeql_test_extract MCP server tool."},"defaultConfiguration":{"enabled":true,"level":"warning"},"help":{"text":"# Query Help for JavaScript ExampleQuery1\n\nTODO\n","markdown":"# Query Help for JavaScript ExampleQuery1\n\nTODO\n"},"properties":{"tags":["mcp-integration-tests"],"description":"Example query for integration testing of the codeql_test_extract MCP server tool.","id":"test/query","kind":"problem","name":"ExampleQuery1","precision":"medium","problem.severity":"warning"}}]},"extensions":[{"name":"mcp-client-integration-tests-static-javascript-src","semanticVersion":"0.0.1+fe0e7d2a7059ebb6c6075ff8eaea04f382747656","locations":[{"uri":"file:///home/runner/work/codeql-development-mcp-server/codeql-development-mcp-server/client/integration-tests/static/javascript/src/","description":{"text":"The QL pack root directory."},"properties":{"tags":["CodeQL/LocalPackRoot"]}},{"uri":"file:///home/runner/work/codeql-development-mcp-server/codeql-development-mcp-server/client/integration-tests/static/javascript/src/codeql-pack.yml","description":{"text":"The QL pack definition file."},"properties":{"tags":["CodeQL/LocalPackDefinitionFile"]}}]},{"name":"codeql/javascript-all","semanticVersion":"2.6.11+ce9c8e6e9fd41ef0967b13849bb6ae2183caf9ad","locations":[{"uri":"file:///home/runner/.codeql/packages/codeql/javascript-all/2.6.11/","description":{"text":"The QL pack root directory."},"properties":{"tags":["CodeQL/LocalPackRoot"]}},{"uri":"file:///home/runner/.codeql/packages/codeql/javascript-all/2.6.11/qlpack.yml","description":{"text":"The QL pack definition file."},"properties":{"tags":["CodeQL/LocalPackDefinitionFile"]}}]},{"name":"codeql/threat-models","semanticVersion":"1.0.31+ce9c8e6e9fd41ef0967b13849bb6ae2183caf9ad","locations":[{"uri":"file:///home/runner/.codeql/packages/codeql/threat-models/1.0.31/","description":{"text":"The QL pack root directory."},"properties":{"tags":["CodeQL/LocalPackRoot"]}},{"uri":"file:///home/runner/.codeql/packages/codeql/threat-models/1.0.31/qlpack.yml","description":{"text":"The QL pack definition file."},"properties":{"tags":["CodeQL/LocalPackDefinitionFile"]}}]}]},"artifacts":[{"location":{"uri":"file:///home/runner/work/codeql-development-mcp-server/codeql-development-mcp-server/client/integration-tests/static/javascript/test/ExampleQuery1/ExampleQuery1.js","index":0}}],"results":[{"ruleId":"test/query","ruleIndex":0,"rule":{"id":"test/query","index":0},"message":{"text":"Example test code file found for codeql_test_extract example query."},"locations":[{"physicalLocation":{"artifactLocation":{"uri":"file:///home/runner/work/codeql-development-mcp-server/codeql-development-mcp-server/client/integration-tests/static/javascript/test/ExampleQuery1/ExampleQuery1.js","index":0}}}]}],"columnKind":"utf16CodeUnits","properties":{"semmle.formatSpecifier":"sarif-latest"}}]}
+{"$schema":"https://json.schemastore.org/sarif-2.1.0.json","version":"2.1.0","runs":[{"tool":{"driver":{"name":"CodeQL","organization":"GitHub","semanticVersion":"2.25.1","rules":[{"id":"test/query","name":"test/query","shortDescription":{"text":"ExampleQuery1"},"fullDescription":{"text":"Example query for integration testing of the codeql_test_extract MCP server tool."},"defaultConfiguration":{"enabled":true,"level":"warning"},"help":{"text":"# Query Help for JavaScript ExampleQuery1\n\nTODO\n","markdown":"# Query Help for JavaScript ExampleQuery1\n\nTODO\n"},"properties":{"tags":["mcp-integration-tests"],"description":"Example query for integration testing of the codeql_test_extract MCP server tool.","id":"test/query","kind":"problem","name":"ExampleQuery1","precision":"medium","problem.severity":"warning"}}]},"extensions":[{"name":"mcp-client-integration-tests-static-javascript-src","semanticVersion":"0.0.1+fe0e7d2a7059ebb6c6075ff8eaea04f382747656","locations":[{"uri":"file:///home/runner/work/codeql-development-mcp-server/codeql-development-mcp-server/client/integration-tests/static/javascript/src/","description":{"text":"The QL pack root directory."},"properties":{"tags":["CodeQL/LocalPackRoot"]}},{"uri":"file:///home/runner/work/codeql-development-mcp-server/codeql-development-mcp-server/client/integration-tests/static/javascript/src/codeql-pack.yml","description":{"text":"The QL pack definition file."},"properties":{"tags":["CodeQL/LocalPackDefinitionFile"]}}]},{"name":"codeql/javascript-all","semanticVersion":"2.6.11+ce9c8e6e9fd41ef0967b13849bb6ae2183caf9ad","locations":[{"uri":"file:///home/runner/.codeql/packages/codeql/javascript-all/2.6.11/","description":{"text":"The QL pack root directory."},"properties":{"tags":["CodeQL/LocalPackRoot"]}},{"uri":"file:///home/runner/.codeql/packages/codeql/javascript-all/2.6.11/qlpack.yml","description":{"text":"The QL pack definition file."},"properties":{"tags":["CodeQL/LocalPackDefinitionFile"]}}]},{"name":"codeql/threat-models","semanticVersion":"1.0.31+ce9c8e6e9fd41ef0967b13849bb6ae2183caf9ad","locations":[{"uri":"file:///home/runner/.codeql/packages/codeql/threat-models/1.0.31/","description":{"text":"The QL pack root directory."},"properties":{"tags":["CodeQL/LocalPackRoot"]}},{"uri":"file:///home/runner/.codeql/packages/codeql/threat-models/1.0.31/qlpack.yml","description":{"text":"The QL pack definition file."},"properties":{"tags":["CodeQL/LocalPackDefinitionFile"]}}]}]},"artifacts":[{"location":{"uri":"file:///home/runner/work/codeql-development-mcp-server/codeql-development-mcp-server/client/integration-tests/static/javascript/test/ExampleQuery1/ExampleQuery1.js","index":0}}],"results":[{"ruleId":"test/query","ruleIndex":0,"rule":{"id":"test/query","index":0},"message":{"text":"Example test code file found for codeql_test_extract example query."},"locations":[{"physicalLocation":{"artifactLocation":{"uri":"file:///home/runner/work/codeql-development-mcp-server/codeql-development-mcp-server/client/integration-tests/static/javascript/test/ExampleQuery1/ExampleQuery1.js","index":0}}}]}],"columnKind":"utf16CodeUnits","properties":{"semmle.formatSpecifier":"sarif-latest"}}]}

client/package.json

@@ -1,6 +1,6 @@
 {
   "name": "codeql-development-mcp-server_client",
-  "version": "2.25.0",
+  "version": "2.25.1",
   "description": "MCP client for integration testing of the CodeQL development MCP server",
   "main": "src/ql-mcp-client.js",
   "type": "module",

extensions/vscode/package.json

@@ -2,7 +2,7 @@
   "name": "vscode-codeql-development-mcp-server",
   "displayName": "CodeQL Development MCP Server",
   "description": "LLM-assisted development of CodeQL queries, libraries, and tests via #ql-mcp prompts, resources, and tools.",
-  "version": "2.25.0",
+  "version": "2.25.1",
   "publisher": "advanced-security",
   "license": "SEE LICENSE IN LICENSE",
   "icon": "media/codeql-icon.png",

package-lock.json

@@ -1,6 +1,6 @@
 {
   "name": "codeql-development-mcp-server_repo",
-  "version": "2.25.0",
+  "version": "2.25.1",
   "description": "An MCP server supporting LLM requests for CodeQL development tools and resources.",
   "private": true,
   "type": "module",
@@ -40,7 +40,7 @@
     "dev:stdio": "npm run dev:stdio -w server",
     "dev:http": "npm run dev:http -w server",
     "format": "prettier --write '**/*.{yml,yaml,md}'",
-    "format:check": "prettier --check '**/*.{yml,yaml,md}'",
+    "format:check": "prettier --check '**/*.{yml,yaml,md}' && npm run lint:md",
     "lint": "npm run lint -w client -w server -w extensions/vscode",
     "lint:fix": "npm run lint:fix -w client -w server -w extensions/vscode",
     "lint:md": "markdownlint '**/*.md'",

package.json

@@ -64773,7 +64773,7 @@ init_package_paths();
 init_logger();
 import_dotenv.default.config({ path: resolve14(packageRootDir, ".env"), quiet: true });
 var PACKAGE_NAME = "codeql-development-mcp-server";
-var VERSION = "2.25.0";
+var VERSION = "2.25.1";
 async function startServer(mode = "stdio") {
   logger.info(`Starting CodeQL Development MCP McpServer v${VERSION} in ${mode} mode`);
   const codeqlBinary = resolveCodeQLBinary();

server/dist/codeql-development-mcp-server.js

@@ -1,6 +1,6 @@
 {
   "name": "codeql-development-mcp-server",
-  "version": "2.25.0",
+  "version": "2.25.1",
   "description": "An MCP server supporting LLM requests for CodeQL development tools and resources.",
   "main": "dist/codeql-development-mcp-server.js",
   "type": "module",