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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 43 12

  2. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 34 21

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 28 13

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 14 3

  5. supervoxel-loss supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    Python 13 2

  6. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 12 5

Repositories

Showing 10 of 723 repositories
  • demystify Public

    Real-time collaborative editing for GitHub-backed MyST manuscripts

    AllenNeuralDynamics/demystify's past year of commit activity
    TypeScript 1 MIT 0 0 0 Updated Oct 25, 2026
  • ibl-ephys-alignment-gui Public Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    AllenNeuralDynamics/ibl-ephys-alignment-gui's past year of commit activity
    Python 12 MIT 20 4 1 Updated Oct 25, 2026
  • aind-dynamic-foraging-bfm-atlas Public

    Interactive, provenance-traced browser for aind-dynamic-foraging-bfm-studies reports

    AllenNeuralDynamics/aind-dynamic-foraging-bfm-atlas's past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 25, 2026
  • zephyr Public

    A network to predict breathing signals from video

    AllenNeuralDynamics/zephyr's past year of commit activity
    Python 0 MIT 0 1 2 Updated Oct 25, 2026
  • aind-dynamic-foraging-bfm-studies Public

    Scientific studies of the dynamic-foraging-bfm stack: one folder per question, with launch records, frozen inputs, analysis and reports. Extracted with full history from aind-dynamic-foraging-bfm-dispatcher.

    AllenNeuralDynamics/aind-dynamic-foraging-bfm-studies's past year of commit activity
    Python 0 MIT 0 2 0 Updated Oct 25, 2026
  • aind-dynamic-foraging-bfm-dispatcher Public

    Job dispatcher for Dynamic Foraging Behavior Foundation Model project

    AllenNeuralDynamics/aind-dynamic-foraging-bfm-dispatcher's past year of commit activity
    Python 0 MIT 0 18 0 Updated Oct 25, 2026
  • LC-beh-physiology-analysis Public
    AllenNeuralDynamics/LC-beh-physiology-analysis's past year of commit activity
    Jupyter Notebook 1 MIT 1 0 0 Updated Oct 25, 2026
  • tongue-tracking Public
    AllenNeuralDynamics/tongue-tracking's past year of commit activity
    Python 0 0 0 0 Updated Oct 24, 2026
  • aind-code-ocean-pipeline-utils Public

    Utilities to for use in code ocean pipelines

    AllenNeuralDynamics/aind-code-ocean-pipeline-utils's past year of commit activity
    Python 0 MIT 0 0 4 Updated Oct 24, 2026
  • aind-dynamic-foraging-bfm-wrapper Public

    Job wrapper for Dynamic Foraging Behavior Foundation Model project

    AllenNeuralDynamics/aind-dynamic-foraging-bfm-wrapper's past year of commit activity
    Python 0 MIT 1 7 0 Updated Oct 24, 2026
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