Issues

• Move the #1060 grouping placements out of the curated parent column

  obophenotype/upheno#1069 · Filter by author matentzn opened on Nov 3, 2026

• Review the union parents of mapping-derived grouping classes

  obophenotype/upheno#1068 · Filter by author matentzn opened on Nov 2, 2026

• Switch process and function absence patterns to 'absent process' (PATO:0040059)

  obophenotype/upheno#1056 · Filter by author matentzn opened on Oct 31, 2026

• Place mapping-derived grouping classes under the common uPheno ancestor of their members

  obophenotype/upheno#1053 · Filter by author matentzn opened on Oct 30, 2026

• Add SubClassOf axioms between pattern classes via reviewed pattern-level rules

  obophenotype/upheno#1052 · Filter by author matentzn opened on Oct 30, 2026
  2

• Harmonise MP and HP EQs where MGI says the terms are the same

  obophenotype/upheno#1048 · Filter by author matentzn opened on Oct 19, 2026
  1

• Use MGI's MP-HP matches to correct split placements in uPheno

  obophenotype/upheno#1047 · Filter by author matentzn opened on Oct 18, 2026
  1

  

• Make rebuilds of generated files produce reviewable diffs

  obophenotype/upheno#1045 · Filter by author matentzn opened on Oct 18, 2026

• Review the 242 uPheno classes obsoleted by the October 2026 import refresh

  obophenotype/upheno#1044 · Filter by author matentzn opened on Oct 18, 2026

• logical definitions for "abnormal modification phenotypes"

  obophenotype/upheno#1041 · Filter by author ValWood opened on Oct 12, 2026
  1

• Which terminology should represent enzymes as the entity in "abnormal level" phenotypes?

  obophenotype/upheno#1040 · Filter by author matentzn opened on Oct 12, 2026

• Replace the placeholder scope comment on UPHENO:0001001 with wording agreed at an editors' call

  obophenotype/upheno#1038 · Filter by author matentzn opened on Oct 1, 2026

• Retire or repurpose the phenotype_modified DOSDP pattern

  obophenotype/upheno#1037 · Filter by author matentzn opened on Oct 1, 2026

• Run LLM mapping validation over the uPheno cross-species mappings

  obophenotype/upheno#1036 · Filter by author matentzn opened on Oct 1, 2026

• Ontology QC workflow has been failing continuously: merged_import.owl does not exist in CI

  obophenotype/upheno#1035 · Filter by author matentzn opened on Oct 1, 2026

• GO:0098734 macromolecule depalmitoylation term is being obsoleted

  obophenotype/upheno#1032 · Filter by author edwong57 opened on Aug 11, 2026
  1

• Add Abnormal morphology of part of cellular component

  pattern-request
  obophenotype/upheno#1030 · Filter by author sbello opened on Jul 17, 2026
  

• review pattern names and text in response to PATO changes

  pattern
  obophenotype/upheno#1029 · Filter by author sbello opened on Jul 6, 2026

• Abnormal volume of anatomical entity

  pattern-request
  obophenotype/upheno#1028 · Filter by author anna-anagnostop opened on Jun 15, 2026

• Identify patterns that need a normal alternate

  editors-callhelp wantedpattern
  obophenotype/upheno#1027 · Filter by author sbello opened on Apr 17, 2026
  3

• broken pattern link

  bug
  obophenotype/upheno#1018 · Filter by author sbello opened on Apr 3, 2026 · April 2026 Release

• Grouping classes mix unspecified and directional phenotypes

  obophenotype/upheno#1015 · Filter by author matentzn opened on Apr 3, 2026

• developmental markers in lab rodentshello!

  obophenotype/upheno#1014 · Filter by author jmfostel opened on Mar 26, 2026 · April 2026 Release
  7

• incorporate new MP-HP mappings

  obophenotype/upheno#1013 · Filter by author sbello opened on Mar 23, 2026 · April 2026 Release
  

• large unstained cell number phenotype

  obophenotype/upheno#1010 · Filter by author jmfostel opened on Mar 20, 2026 · April 2026 Release
  1