Fix some inconsistencies

.gitignore

@@ -31,12 +31,19 @@ precice-config.xml.orig
 *.o
 *.so
 .out
+
+# CMake
 build/
+CMakeFiles/
+cmake_install.cmake
+CMakeCache.txt
+Makefile
 
 # Python
 .venv/
 __pycache__/
 *.pyc
+*.pyo
 
 # Rust
 Cargo.lock
@@ -60,6 +67,10 @@ postProcessing/
 *.foam
 *.OpenFOAM
 dynamicCode
+Make/*
+!Make/files
+!Make/options
+lnInclude/
 
 # CalculiX
 spooles.out
@@ -108,6 +119,9 @@ install*
 # G+smo
 pointData.csv
 
+# FMI
+*.fmu
+
 # FEniCS covered by .vtk
 # Nutils covered by .vtk
 

flow-around-controlled-moving-cylinder/fluid-openfoam/.gitignore

@@ -0,0 +1,2 @@
+# Pre-processing 0.orig
+0/

flow-over-heated-plate/solid-fenicsx/clean.sh

@@ -1,4 +1,4 @@
-#!/bin/sh
+#!/usr/bin/env bash
 set -e -u
 
 . ../../tools/cleaning-tools.sh

flow-over-heated-plate/solid-fenicsx/run.sh

@@ -1,10 +1,14 @@
-#!/bin/sh
+#!/usr/bin/env bash
 set -e -u
 
-if [ ! -d .venv ]; then
+if [ ! -v PRECICE_TUTORIALS_NO_VENV ]; then
+    if [ ! -d ".venv" ]; then
         python3 -m venv --system-site-packages .venv
+        source .venv/bin/activate
+        pip install -r requirements.txt && pip freeze > pip-installed-packages.log
+    else
+        source .venv/bin/activate
     fi
-. .venv/bin/activate
-pip install -r requirements.txt
+fi
 
 python3 solid.py

heat-exchanger/fluid-inner-openfoam/.gitignore

@@ -0,0 +1 @@
+constant/polyMesh

heat-exchanger/fluid-outer-openfoam/.gitignore

@@ -0,0 +1 @@
+constant/polyMesh

heat-exchanger/solid-calculix/.gitignore

@@ -0,0 +1,10 @@
+# Files downloaded via run.sh
+adiabatic.dfl
+all.msh
+inner-interface.flm
+inner-interface.nam
+inner-interface.sur
+outer-interface.flm
+outer-interface.nam
+outer-interface.sur
+solid.inp

partitioned-heat-conduction/dirichlet-fenics/run.sh

@@ -4,13 +4,14 @@ set -e -u
 . ../../tools/log.sh
 exec > >(tee --append "$LOGFILE") 2>&1
 
-if [ ! -v PRECICE_TUTORIALS_NO_VENV ]
-then
-    if [ ! -d .venv ]; then
+if [ ! -v PRECICE_TUTORIALS_NO_VENV ]; then
+    if [ ! -d ".venv" ]; then
         python3 -m venv --system-site-packages .venv
+        source .venv/bin/activate
+        pip install -r ../solver-fenics/requirements.txt && pip freeze > pip-installed-packages.log
+    else
+        source .venv/bin/activate
     fi
-    . .venv/bin/activate
-    pip install -r ../solver-fenics/requirements.txt
 fi
 
 if [ $# -eq 0 ] 

partitioned-heat-conduction/dirichlet-fenicsx/run.sh

@@ -1,10 +1,14 @@
-#!/bin/sh
+#!/usr/bin/env bash
 set -e -u
 
-if [ ! -d .venv ]; then
+if [ ! -v PRECICE_TUTORIALS_NO_VENV ]; then
+    if [ ! -d ".venv" ]; then
         python3 -m venv --system-site-packages .venv
+        source .venv/bin/activate
+        pip install -r ../solver-fenicsx/requirements.txt && pip freeze > pip-installed-packages.log
+    else
+        source .venv/bin/activate
     fi
-. .venv/bin/activate
-pip install -r ../solver-fenicsx/requirements.txt
+fi
 
 python3 ../solver-fenicsx/heat.py Dirichlet

partitioned-heat-conduction/neumann-fenics/run.sh

@@ -4,13 +4,14 @@ set -e -u
 . ../../tools/log.sh
 exec > >(tee --append "$LOGFILE") 2>&1
 
-if [ ! -v PRECICE_TUTORIALS_NO_VENV ]
-then
-    if [ ! -d .venv ]; then
+if [ ! -v PRECICE_TUTORIALS_NO_VENV ]; then
+    if [ ! -d ".venv" ]; then
         python3 -m venv --system-site-packages .venv
+        source .venv/bin/activate
+        pip install -r ../solver-fenics/requirements.txt && pip freeze > pip-installed-packages.log
+    else
+        source .venv/bin/activate
     fi
-    . .venv/bin/activate
-    pip install -r ../solver-fenics/requirements.txt
 fi
 
 python3 ../solver-fenics/heat.py Neumann

partitioned-heat-conduction/neumann-fenicsx/run.sh

@@ -1,9 +1,14 @@
-#!/bin/sh
+#!/usr/bin/env bash
 set -e -u
 
-if [ ! -d .venv ]; then
+if [ ! -v PRECICE_TUTORIALS_NO_VENV ]; then
+    if [ ! -d ".venv" ]; then
         python3 -m venv --system-site-packages .venv
+        source .venv/bin/activate
+        pip install -r ../solver-fenicsx/requirements.txt && pip freeze > pip-installed-packages.log
+    else
+        source .venv/bin/activate
     fi
-. .venv/bin/activate
-pip install -r ../solver-fenicsx/requirements.txt
+fi
+
 python3 ../solver-fenicsx/heat.py Neumann

partitioned-heat-conduction/solver-fenicsx/clean.sh

@@ -1,4 +1,4 @@
-#!/bin/sh
+#!/usr/bin/env bash
 set -e -u
 
 . ../../tools/cleaning-tools.sh

quickstart/solid-cpp/.gitignore

@@ -1,5 +1 @@
-CMakeFiles/
-cmake_install.cmake
-CMakeCache.txt
-Makefile
 rigid_body_solver

resonant-circuit/capacitor-julia/clean.sh

@@ -1,4 +1,4 @@
-#!/bin/sh
+#!/usr/bin/env bash
 set -e -u
 
 . ../../tools/cleaning-tools.sh

resonant-circuit/capacitor-matlab/clean.sh

@@ -1,4 +1,4 @@
-#!/bin/sh
+#!/usr/bin/env bash
 set -e -u
 
 . ../../tools/cleaning-tools.sh

resonant-circuit/capacitor-matlab/run.sh

@@ -1,4 +1,4 @@
-#!/bin/sh
+#!/usr/bin/env bash
 
 # Run MATLAB code without GUI
 matlab -nodisplay -r "capacitor;exit;"

resonant-circuit/capacitor-python/clean.sh

@@ -1,4 +1,4 @@
-#!/bin/sh
+#!/usr/bin/env bash
 set -e -u
 
 . ../../tools/cleaning-tools.sh

resonant-circuit/coil-julia/clean.sh

@@ -1,4 +1,4 @@
-#!/bin/sh
+#!/usr/bin/env bash
 set -e -u
 
 . ../../tools/cleaning-tools.sh

resonant-circuit/coil-matlab/clean.sh

@@ -1,4 +1,4 @@
-#!/bin/sh
+#!/usr/bin/env bash
 set -e -u
 
 . ../../tools/cleaning-tools.sh

resonant-circuit/coil-matlab/run.sh

@@ -1,4 +1,4 @@
-#!/bin/sh
+#!/usr/bin/env bash
 
 # Run MATLAB code without GUI
 matlab -nodisplay -r "coil;exit;"

resonant-circuit/coil-python/clean.sh

@@ -1,4 +1,4 @@
-#!/bin/sh
+#!/usr/bin/env bash
 set -e -u
 
 . ../../tools/cleaning-tools.sh

resonant-circuit/plot-solution.sh

@@ -1,4 +1,4 @@
-#!/bin/sh
+#!/usr/bin/env bash
 
 if [ "${1:-}" = "" ]; then
     echo "No target directory specified. Please specify the directory of the participant containing the watchpoint, e.g. ./plot-displacement.sh coil-python."

volume-coupled-flow/.gitignore

@@ -1 +1,2 @@
+# Signal file expected by the system tests specifically in uni-directional coupling
 fluid-participant-finished.log