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Please ignore the command in mongo :) It will be replaced soon with proper user authentication
…on to sh - Removed the traefik service and renamed traefik-forward-auth to ovis- with ovis-traefik-forward-auth the labels, however would need help there as i got no knowledge of how OAuth2 works (Torben initialized that container) - Updated MongoDB service configuration to include a direct initialization script for user and operation collections in the sh instead of in the compose directly - Adjusted volume paths to only use the /var/cache/bridgehead/ccp directory - Adjusted frontend and backend service labels for Traefik routing to not use ports - Cleaned up unnecessary network definitions and volumes. - Renamed FHIR Server URL to bridgehead-ccp-blaze:8080/fhir - Removed redundant entrypoint (python main.py) of fhir transformer
- Replaced GUI_HOST with HOST - Removed NODE_ENV - Combine init_onco and backend service - removed node_modules and .svelte-kit volumes - removed mongodb volumes - adjusted http_proxy and https_proxy - adjusted path prefix from oaut2 to oauth2-ovis - removed network-mode "host" in fhir-transformer service
Update ovis-compose.yml
lablans
requested changes
Mar 19, 2026
Threated
reviewed
Mar 19, 2026
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Thanks for the comments and your time, we will adjust most of them, others need changes in the application itself for that to work, which takes a bit longer. |
TKussel
reviewed
Mar 19, 2026
tm16-medma
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Mar 23, 2026
…tracts Apply the PR #375 review feedback by removing Bridgehead-specific compose/setup overrides that duplicated upstream OVIS behavior and by switching to the upstream-built Mongo image that already contains init logic. - rename CCP OVIS services to consistent upstream-style names (`ovis-*`) and update internal dependencies - switch Mongo service image from direct `mongo:latest` + host-mounted init script to `docker.verbis.dkfz.de/ovis/ovis-backend-mongodb:latest` - remove obsolete Mongo init bind mount (`/docker-entrypoint-initdb.d/init.js`) from compose - drop redundant runtime overrides from compose (`restart`, `command`, `user`, `working_dir`) - remove duplicated app-default/preprocessor env overrides (`OVIS_PREPROC_*`, misc backend defaults) and keep deployment wiring only - fix Mongo connection env usage to `ADDRESS` and point services to `ovis-backend-database-mongodb` - remove temporary root-compat Traefik redirect shim and keep mounted `/ccp-ovis` routing labels - remove setup-time generation of Mongo init.js and related cache directory prep from `ccp/modules/ovis-setup.sh`
Removed unnecessary Traefik router configurations for compatibility.
Updated FHIR credentials to empty strings in ovis-compose.yml
Removed dependency condition on the blaze service.
…ose file Eliminated the environment variables and volume mounts related to trusted CA certificates in both the ovis-compose.yml and ovis-setup.sh files. This streamlines the configuration by relying solely on the system trust store for OIDC provider communication, simplifying the initialization process for the OVIS module.
…ompose.yml Removed outdated labels for the ovis-backend service and updated the middleware configuration for the ovis-frontend-ccp service to ensure proper routing and authentication. This streamlines the service setup and enhances clarity in the configuration.
Introduced the APP_DOMAIN variable to the OVIS service configuration, allowing for dynamic domain assignment based on the HOST environment variable. This enhancement improves flexibility in service deployment.
Replaced the APP_DOMAIN variable with ORIGIN for improved clarity in the OVIS frontend service configuration. Additionally, removed the stripprefix middleware from the Traefik router setup to streamline routing and enhance service management.
patrick-skowronek
requested changes
Mar 31, 2026
Updated authentication headers and removed profiles from services.
tm16-medma
added a commit
that referenced
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Jul 14, 2026
…tracts Apply the PR #375 review feedback by removing Bridgehead-specific compose/setup overrides that duplicated upstream OVIS behavior and by switching to the upstream-built Mongo image that already contains init logic. - rename CCP OVIS services to consistent upstream-style names (`ovis-*`) and update internal dependencies - switch Mongo service image from direct `mongo:latest` + host-mounted init script to `docker.verbis.dkfz.de/ovis/ovis-backend-mongodb:latest` - remove obsolete Mongo init bind mount (`/docker-entrypoint-initdb.d/init.js`) from compose - drop redundant runtime overrides from compose (`restart`, `command`, `user`, `working_dir`) - remove duplicated app-default/preprocessor env overrides (`OVIS_PREPROC_*`, misc backend defaults) and keep deployment wiring only - fix Mongo connection env usage to `ADDRESS` and point services to `ovis-backend-database-mongodb` - remove temporary root-compat Traefik redirect shim and keep mounted `/ccp-ovis` routing labels - remove setup-time generation of Mongo init.js and related cache directory prep from `ccp/modules/ovis-setup.sh`
patrick-skowronek
requested changes
Aug 13, 2026
| ;; | ||
| postRun | postUpdate) | ||
| ;; | ||
| ### ovisreimport is untested, just writing down the idea to test it later |
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Why is this commented out? Either delete it or fix it
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Removed the commented ovisreimport block from bridgehead
patrick-skowronek
approved these changes
Aug 13, 2026
Sites without direct Docker Hub access cannot reach samply/*, and the tag now differs per environment like the other modules.
test -d on a node_modules directory was true even with Apollo dead, so the frontend's service_healthy condition gated on nothing.
lablans
approved these changes
Aug 13, 2026
Threated
approved these changes
Aug 13, 2026
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