Skip to content

notebook for imputation methods using PhysioNet2012#61

Draft
sueoglu wants to merge 1 commit into
mainfrom
notebooks/issue-1061
Draft

notebook for imputation methods using PhysioNet2012#61
sueoglu wants to merge 1 commit into
mainfrom
notebooks/issue-1061

Conversation

@sueoglu

@sueoglu sueoglu commented Jul 1, 2026

Copy link
Copy Markdown
Collaborator
  • Adds imputation_nb.ipynb, a new tutorial that walks through ehrapy's six imputation methods (explicit_impute, simple_impute, locf_impute, knn_impute, miss_forest_impute, mice_forest_impute) using the PhysioNet Challenge 2012 ICU dataset.
  • All methods are benchmarked on a 200-patient subset by masking 10% of observed values and comparing RMSE/MAE, mean/std deviation from ground truth, and runtime/memory cost (last one in progress)
  • Closes out with a decision guide (which method to pick based on variance sensitivity, speed needs, temporal structure, or cluster structure) and applies mice_forest_impute (we could also use locf) to the full dataset with before/after sanity checks.

side note: will see how to fix the rendering problem especially for the raincloud plots since its a little weird atm

@review-notebook-app

Copy link
Copy Markdown

Check out this pull request on  ReviewNB

See visual diffs & provide feedback on Jupyter Notebooks.


Powered by ReviewNB

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant