Add deepcell types 2026-06-23 weights to registry#8
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…25-06-09 Stacked on vanvalenlab#8. Three changes to the deepcell-types asset registry: 1. Model: serve the vocab-bundled 2026 checkpoints and default to 2026-06-15. - 2026-06-15 (default) -> deepcell-types_2026-06-15_resmlp.pt, b819a7e0 - 2026-06-23 -> deepcell-types_2026-06-23_resmlp_ptft.pt, 402e94c1 These bundle ct2idx/canonical_channels so deepcell-types predict()'s vocab guard accepts them (the un-bundled 067f558b in vanvalenlab#8 fails it). This matches deepcell-types _model_registry (PR xuefei-wang/deepcell-types#70). 2. Baselines: add a deepcell-types-baselines section + download helper for the comparison baselines (cellsighter, maps [+ _stats], xgboost [+ .remap]), hashes matching the 2026-06-30 retrains in deepcell-types #74. Each baseline maps to a list of assets to carry companion files. Nimbus is omitted (its weights are distributed upstream via nimbus-inference, not re-hosted). 3. Drop the legacy 2025-06-09 CLIP entries: they are incompatible with the current deepcell-types code and have no deepcell-types consumers (both the old and new packages download via their own _auth, not deepcell_auth). Assets must be uploaded to users.deepcell.org before merge. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_016oVttaRJScBzjoJDB8ZkpA
… conflicts main advanced (torch-mesmer weights, vanvalenlab#7) after this branch was cut. Resolved by keeping all of main's additions (torch-mesmer manifest section + download_torch_mesmer_model + its __all__ entry) alongside the deepcell-types changes on this branch: - deepcell-types serves the bundled 2026 checkpoints, default 2026-06-15 - new deepcell-types-baselines section + download_deepcell_types_baseline - legacy 2025-06-09 entries dropped Also fixes a latent export bug: download_deepcell_types_baseline is now added to __all__ (this branch predated main introducing __all__, so the function would not have been re-exported via `from ._download import *`). Co-Authored-By: Claude Fable 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_016oVttaRJScBzjoJDB8ZkpA
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Heads-up @rossbar — I pushed two commits directly onto this PR's branch ( 1. Serve the vocab-bundled 2026 checkpoints; default to
The original 2. Add comparison baselines ( 3. Dropped the legacy Merge/conflict: I also merged current
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Okay here's the replacement for #5 !
@xuefei-wang can you confirm that the hash for this set of weights is the right one (i.e. the listed hash matches the
md5sumof the weights that should be uploaded)